Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs112433836 chr6:43379029 A/G 4.11E-12 485 31.27 29.4 44.3 KM Plot
PRAD rs11244269 chr9:133938098 A/G 0.000147 472 32.57 30.08 29.77 KM Plot
PRAD rs112458858 chr22:18443009 GCTAGGCAGTGAGCTCA/G 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs112539413 chr1:93859582 T/TA 4.51E-6 484 31.38 27.47 18.97 KM Plot
PRAD rs112577603 chr1:202777105 C/G 6.88E-6 488 30.87 30.77 37.17 KM Plot
PRAD rs112599953 chr20:2055431 C/CA 3.87E-7 488 28.77 33.6 29.55 KM Plot
PRAD rs112605315 chr4:187812160 C/T 2.17E-6 480 31.18 28.57 26.8 KM Plot
PRAD rs112620640 chr1:167505230 A/G 0.000153 486 30.77 31.25 15.77 KM Plot
PRAD rs11263654 chr11:69238123 C/T 1.86E-5 494 30.97 31.13 25.5 KM Plot
PRAD rs11263655 chr11:69238599 C/G 1.86E-5 494 30.97 31.13 25.5 KM Plot
PRAD rs112678550 chr1:1158020 A/C 3.49E-9 490 31.27 30.73 13.73 KM Plot
PRAD rs1126818 chr17:79617830 G/A 2.9E-7 472 30.78 32.4 25.67 KM Plot
PRAD rs112690932 chr4:187811548 C/G 2.06E-6 483 31.13 28.57 26.8 KM Plot
PRAD rs112691858 chr20:430132 G/A 7.32E-8 493 31.27 24.13 21.2 KM Plot
PRAD rs112702671 chr5:180220930 C/T 0 485 31.13 28.1 14.87 KM Plot